http://w.atwiki.jp/metalmetabo/ Metal Meta-Metabolome Project ja 2010-11-09T20:58:45+09:00 1289303925 https://w.atwiki.jp/metalmetabo/pages/37.html &counter() visitors ＊＊＊＊　　JREC-INで就職した奴　　＊＊＊＊ http://www.unkar.org/read/science6.2ch.net/life/1234855617 2010-11-09T20:58:45+09:00 1289303925 https://w.atwiki.jp/metalmetabo/pages/36.html &counter() visitors ** A metabolic study reveals that plant-based compounds cooperate to overcome dehydration http://www.rikenresearch.riken.jp/eng/research/5806 http://www.rikenresearch.riken.jp/images/figures/hi_3382.jpg ** Comparative systems biology: from bacteria to man http://wires.wiley.com/WileyCDA/WiresArticle/wisId-WSBM74.html http://media.wiley.com/wires/WSBM/WSBM74/nfig002.jpg ** The application of flux balance analysis in systems biology http://wires.wiley.com/WileyCDA/WiresArticle/articles.html?doi=10.1002%2Fwsbm.60 http://media.wiley.com/wires/WSBM/WSBM60/nfig002.jpg ** Comparative systems biology: from bacteria to man http://wires.wiley.com/WileyCDA/WiresArticle/wisId-WSBM74.html http://media.wiley.com/wires/WSBM/WSBM74/nfig003.jpg 2010-10-06T22:01:14+09:00 1286370074 https://w.atwiki.jp/metalmetabo/pages/35.html **74. Comparative metabolic flux analysis of lysine-producing Corynebacterium glutamicum cultured on glucose or fructose nih.gov [HTML]P Kiefer, E Heinzle, O Zelder, C … - Applied and …, 2004 - Am Soc Microbiol >... A comprehensive approach to 13 C tracer studies, labeling measurements by gas chromatography-mass spectrometry, metabolite balancing, and isotopomer modeling, was applied for comparative metabolic network analysis of lysine-producing Corynebacterium glutamicum ... **70. It is all about metabolic fluxes nih.gov [HTML]J Nielsen - Journal of bacteriology, 2003 - Am Soc Microbiol http://scholar.google.com/scholar?q=related:xAvLLrdbbNYJ:scholar.google.com/&hl=ja&as_sdt=2000 >... I. Experimental observations. Biotechnol. Bioeng. 55:305-316.[CrossRef] 21; Thykaer, J., B. Christensen, and J. Nielsen. 2002. [[Metabolic network analysis]] of an adipoyl-7-ADCA producing strain of Penicillium chrysogenum: elucidation of adipate degradation.Metab. Eng. ... **47. In vivo a 2010-09-28T22:21:47+09:00 1285680107 https://w.atwiki.jp/metalmetabo/pages/34.html &counter() visitors **In vivo analysis of intracellular amino acid labelings by GC/MS. C Wittmann, M Hans, E Heinzle - Analytical biochemistry, 2002 - mendeley.com >... TBDMS derivatization of amino acids is especially useful in metabolic network analysis, because M-57 fragments containing the entire carbon skeleton of the analyte can be observed by GC/MS with high signal intensities 8. The potential of the method is exemplified for ... **Comparative metabolic flux analysis of lysine-producing Corynebacterium glutamicum cultured on glucose or fructose nih.gov [HTML]P Kiefer, E Heinzle, O Zelder, C … - Applied and …, 2004 - Am Soc Microbiol >... A comprehensive approach to 13 C tracer studies, labeling measurements by gas chromatography-mass spectrometry, metabolite balancing, and isotopomer modeling, was applied for comparative metabolic network analysis of lysine-producing Corynebacterium glutamicum ... **It is all about metabolic fluxes nih.gov [HTML]J Nielsen - Journ 2010-09-28T22:16:14+09:00 1285679774 https://w.atwiki.jp/metalmetabo/pages/33.html &counter() visitors **Metabolic network analysis of Streptomyces tenebrarius, a Streptomyces species with an active Entner-Doudoroff pathway nih.gov [HTML]I Borodina, C Scholler, A Eliasson, J … - Applied and …, 2005 - Am Soc Microbiol http://scholar.google.com/scholar?q=related:vbWz9Ak9HjwJ:scholar.google.com/&hl=ja&as_sdt=2000 >Streptomyces tenebrarius is an industrially important microorganism, producing an antibiotic complex that mainly consists of the aminoglycosides apramycin, tobramycin carbamate, and kanamycin B carbamate. When S. tenebrarius is used for industrial tobramycin ... **Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network J Lee, H Yun, AM Feist, BØ Palsson, SY Lee - Applied microbiology and …, 2008 - Springer http://scholar.google.com/scholar?q=related:6k93cgR0CzwJ:scholar.google.com/&hl=ja&as_sdt=2000 >Page 1. GENOMICS AND PROTEOMICS Genome-scale reconstruction and in silico analysis of the Clo 2010-09-28T22:05:57+09:00 1285679157 https://w.atwiki.jp/metalmetabo/pages/32.html &counter() visitors **Development of network-based pathway definitions: the need to analyze real metabolic networks nhahocotton.org.vn [PDF]BO Palsson, ND Price, JA Papin - Update, 2003 - nhahocotton.org.vn http://scholar.google.com/scholar?q=related:RJrIZTi52eQJ:scholar.google.com/&hl=ja&as_sdt=2000 >... A recent article [1] addresses the important issue of network-based metabolic pathway analysis. ... References 1 Klamt, S. and Stelling, J. (2003) Two approaches for metabolic pathway analysis? Trends Biotechnol. 21, 64–69 2 Karp, PD et al. ... **PathFinder: reconstruction and dynamic visualization of metabolic pathways oxfordjournals.org [PDF]A Goesmann, M Haubrock, F Meyer, J … - …, 2002 - Oxford Univ Press http://scholar.google.com/scholar?q=related:tN609hXVn9QJ:scholar.google.com/&hl=ja&as_sdt=2000 >... database. Nucleic Acids Res., 26, 43–45. Tohsato,Y., Matsuda,H. and Hashimoto,A.(2000) A multiple align- ment algorithm for metabolic pathway analysis using enzyme hie 2010-09-28T21:54:44+09:00 1285678484 https://w.atwiki.jp/metalmetabo/pages/31.html &counter() visitors **The small world inside large metabolic networks royalsocietypublishing.org [PDF]A Wagner, DA Fell - … of the Royal Society of London …, 2001 - rspb.royalsocietypublishing.org http://scholar.google.com/scholar?q=related:RzgGd87o6owJ:scholar.google.com/&hl=ja&as_sdt=2000 >Page 1. doi: 10.1098/rspb.2001.1711 , 1803-1810 268 2001 Proc. R. Soc. Lond. B Andreas Wagner and David A. Fell The small world inside large metabolic networks References http://rspb.royalsocietypublishing.org/content/268/1478/1803#related-urls Article cited in: ... **In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data vcu.edu [PDF]JS Edwards, RU Ibarra, BO Palsson - Nature biotechnology, 2001 - nature.com http://scholar.google.com/scholar?q=related:E0x6EPMqz7kJ:scholar.google.com/&hl=ja&as_sdt=2000 >... J. Theor. Biol. 203, 249–83 (2000). | Article | PubMed | ISI | ChemPort |; Schilling, CH, Schuster, S., Palsson, BO & Heinrich, R. [[ 2010-09-28T21:42:52+09:00 1285677772 https://w.atwiki.jp/metalmetabo/pages/30.html &counter() visitors **Metabolic pathway analysis of enzyme-deficient human red blood cells T ÇakIr, CS Tacer, KÖ Ülgen - Biosystems, 2004 - Elsevier http://scholar.google.com/scholar?q=related:8w1qIgoYqGcJ:scholar.google.com/&hl=ja&as_sdt=2000 >Five enzymopathies (G6PDH, TPI, PGI, DPGM and PGK deficiencies) in the human red blood cells are investigated using a stoichiometric modeling approach, ie, metabolic pathway analysis. Elementary flux modes (EFMs) corresponding to each enzyme deficiency case ... **Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms oxfordjournals.org [PDF]H Ma, AP Zeng - Bioinformatics, 2003 - Oxford Univ Press http://scholar.google.com/scholar?q=related:SuHZgSLeNw8J:scholar.google.com/&hl=ja&as_sdt=2000 >Page 1. BIOINFORMATICS Vol. 19 no. 2 2003 Pages 270–277 Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms Hongwu Ma1, 2 a 2010-09-28T21:22:29+09:00 1285676549 https://w.atwiki.jp/metalmetabo/pages/29.html &counter() visitors **Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N 315: an initial draft to the two-dimensional annotation biomedcentral.com [HTML]SA Becker, BØ Palsson - BMC microbiology, 2005 - biomedcentral.com http://scholar.google.com/scholar?q=related:829ZIciJNnkJ:scholar.google.com/&hl=ja&as_sdt=2000 >... J Biol Chem 2004, 279:39532-39540. PubMed Abstract | Publisher Full Text OpenURL. Papp B, Pal C, Hurst LD: [[Metabolic network analysis]] of the causes and evolution of enzyme dispensability in yeast. Nature 2004, 429:661-664. ... **Adaptive evolution of bacterial metabolic networks by horizontal gene transfer linkgroup.hu [PDF]C Pál, B Papp, MJ Lercher - Nature Genetics, 2005 - nature.com http://scholar.google.com/scholar?q=related:j65eRY_pFyIJ:scholar.google.com/&hl=ja&as_sdt=2000 >... were present. Gene families with more than one member in E. coli K-12 were excluded from the analysis. Metabolic network analysis. We examined th 2010-09-28T21:00:33+09:00 1285675233 https://w.atwiki.jp/metalmetabo/pages/28.html &counter() visitors **Application of regulatory sequence analysis and metabolic network analysis to the interpretation of gene expression data psu.edu [PDF]J Van Helden, D Gilbert, L Wernisch, M Schroeder, … - Computational …, 2001 - Springer http://scholar.google.com/scholar?q=related:JS_4j3CP5nEJ:scholar.google.com/&hl=ja&as_sdt=2000 **Comparative metabolic network analysis of two xylose fermenting recombinant Saccharomyces cerevisiae strains T Grotkjær, P Christakopoulos, J Nielsen, L … - Metabolic Engineering, 2005 - Elsevier http://scholar.google.com/scholar?q=related:m6nOh8HQbaIJ:scholar.google.com/&hl=ja&as_sdt=2000 >The recombinant xylose fermenting strain Saccharomyces cerevisiae TMB3001 can grow on xylose, but the xylose utilisation rate is low. One important reason for the inefficient fermentation of xylose to ethanol is believed to be the imbalance of redox co-factors. In the present ... **The Edinburgh human metabolic network reconstruction and its functiona 2010-09-28T21:01:27+09:00 1285675287