リンク/bioinformatics - mimiate @ ウィキ

バイオインフォマティクス関係

https://www.ebi.ac.uk/Tools/services/web/toolresult.ebi?jobId=clustalo-I20140411-030436-0080-56682434-pg&tool=clustalo&showColors=true#

• シークエンスデータの波形確認　FinchTV（Mac向けかもしれない）
  • windowsならMEGAのほうが使いやすいかも
• Clustal Omega multiple alignment of DNA, RNA or protein
• 第５学期バイオメトリックス講義資料
• BLAST homology検索
  • Mega BLAST suitable for extremely similar but slightly different sequence (because of errors in identifying sequence)
  • PSI-BLAST (Position-Specific score Iterated BLAST) search significant site by running BLAST→iterate BLAST on the significant site you hace just picked up
• PROSITE database of protein families, domains and functional sites; motif-based registration and searching
• DALI put protein structure for query sequence
• Pfam Protein families database of alignments and HMMs
• PSORT tool for predicting protein localization based on known motifs, proportion of each aminoacid (especially N-terminal) etc.
• PDB