papers6 - Metal Meta-Metabolome Project

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Bioinformatics basics

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1998

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Profile hidden Markov models

oxfordjournals.org [PDF]SR Eddy - Bioinformatics, 1998 - Oxford Univ Press
http://scholar.google.co.jp/scholar?q=related:7bJNHzMLBjQJ:scholar.google.com/&hl=ja&as_sdt=2000

Proteins,RNAsandotherfeaturesingenomescanusuallybe classified into families of related sequences and structures (Henikoff et al., 1997). Different residues in a functional se- quence are subject to different selective pressures. Multiple alignments of a sequence family reveal this in ...

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1997

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

nih.gov [PDF]… Altschul, TL Madden, AA Schaffer, J Zhang, … - Nucleic acids …, 1997 - Oxford Univ Press
http://scholar.google.co.jp/scholar?q=related:L8Mg8cQdtAUJ:scholar.google.com/&hl=ja&as_sdt=2000

... Stephen F. Altschul* , Thomas L. Madden , Alejandro A. Schäffer 1 , Jinghui Zhang , Zheng Zhang2 ... programming proceeds both forward and backward through the path graph (Zheng Zhang et al ... 3 ,15 ) which, using the edge-effect correction described by Altschul and Gish (3 ... 引用元 32791 - 関連記事 - 全 196 バージョン

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1996

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Local alignment statistics

SF Altschul, W Gish - Methods in enzymology, 1996 - cat.inist.fr
http://scholar.google.co.jp/scholar?q=related:Qt73H--A0JEJ:scholar.google.com/&hl=ja&as_sdt=2000

引用元 600 - 関連記事 - 全 5 バージョン

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1994

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix …

nih.gov [PDF]JD Thompson, DG Higgins, TJ Gibson - Nucleic acids research, 1994 - Oxford Univ Press
http://scholar.google.co.jp/scholar?q=related:NXbA1xoK8F8J:scholar.google.com/&hl=ja&as_sdt=2000&as_ylo=1981&as_yhi=2010

The sensitivity of the commonly used progressive multiple sequence alignment method has been greatly improved for the alignment of divergent protein sequences. Firstly, individual weights are assigned to each sequence in a partial alignment in order to down- weight near- ...

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1992

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Amino acid substitution matrices from protein blocks

pnas.org [PDF]S Henikoff, JG Henikoff - … of Sciences of the United States …, 1992 - National Acad Sciences
http://scholar.google.co.jp/scholar?q=related:vwE9PWItT4AJ:scholar.google.com/&hl=ja&as_sdt=2000

Proc. Natl. Acad. Sci. USA Vol. 89, pp. 10915-10919, November 1992 Biochemistry ... Amino acid substitution matrices from protein blocks ... (amino add sequence/alignment algorithms/data base srching) ... Howard Hughes Medical Institute, Basic Sciences ...

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1981

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Comparison of biosequences

TF Smith, MS Waterman - Advances in Applied Mathematics, 1981 - Elsevier
http://scholar.google.co.jp/scholar?q=related:z1Q2762u7_0J:scholar.google.com/&hl=ja&as_sdt=2000&as_ylo=1981&as_yhi=1981

ADVANCES IN APPLIED MATHEMATICS 2, 482489 (1981) Comparison of Biosequences TEMPLE F. SMITH Northern Michigan University, Marquette, Michigan 48955 AND MICHAEL S. WATERMAN Los Alamos Scientific Laboratory, Los Alarms, New Mexico 87545 Homology and ...